PROtein Binding Evaluation
A webserver to dock two protein molecules

News!!! PRUNE and PROBE score acceptable solution in Capri experiment Round 24, Target 50.

Upload receptor file (PDB format):   ?
Upload ligand file (PDB format):   ?

Scoring and Ranking  ?       (Recommended for accelerated performance)
Transformation Matrix: ?

Full docking   ?
?                          convert MSE to MET ?
How many complexes do you want?

Optional: ?     (in case you want job completion notification through email)
Name:       Email:

Sample Submission

Use PRUNE to obtain a subset of your own docking decoys.

Last modified: April 07, 2011.

How to cite:
1. Mitra, P. & Pal, D. (2011) Using correlated parameters for improved ranking of protein-protein docking decoys. J Comput Chem. 32(5):787-796.   [PubMed]
2. Mitra, P. & Pal, D. (2011) PRUNE and PROBE - two modular web services for protein-protein docking. Nucleic Acids Res. 39(Web Server Issue):W229-34 [PDF]   [PubMed]

Other servers: PRUNE IPAC IPACdb dockYard